[TUTORIAL]Instalar o Folding no Ubuntu 64 bits numa VM.

Incrivel, mas segui os passos do Portugal@Folding que o viskonde colocou e não consegui, dá-me isto:

Código: 
root@fabio-desktop:~# cd /home/fabio/Desktop/FahMon/src
root@fabio-desktop:/home/fabio/Desktop/FahMon/src# ./fahmon
-bash: ./fahmon: Arquivo ou diretório inexistente
root@fabio-desktop:/home/fabio/Desktop/FahMon/src# scons
scons: Reading SConscript files ...
scons: done reading SConscript files.
scons: Building targets ...
o aboutDialog.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include aboutDialog.cpp
sh: o: not found
o base64Codec.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include base64Codec.cpp
sh: o: not found
o benchmark.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include benchmark.cpp
sh: o: not found
o benchmarksDialog.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include benchmarksDialog.cpp
sh: o: not found
o benchmarksManager.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include benchmarksManager.cpp
sh: o: not found
o client.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include client.cpp
sh: o: not found
o clientDialog.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include clientDialog.cpp
sh: o: not found
o clientHelperThread.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include clientHelperThread.cpp
sh: o: not found
o clientsManager.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include clientsManager.cpp
sh: o: not found
o core.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include core.cpp
sh: o: not found
o dataInputStream.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include dataInputStream.cpp
sh: o: not found
o dataOutputStream.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include dataOutputStream.cpp
sh: o: not found
o eta.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include eta.cpp
sh: o: not found
o fahlogAnalyzer.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include fahlogAnalyzer.cpp
sh: o: not found
o firstTimeDialog.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include firstTimeDialog.cpp
sh: o: not found
o htmlParser.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include htmlParser.cpp
sh: o: not found
o httpDownloader.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include httpDownloader.cpp
sh: o: not found
o listViewClients.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include listViewClients.cpp
sh: o: not found
o main.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include main.cpp
sh: o: not found
o mainDialog.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include mainDialog.cpp
sh: o: not found
o messagesFrame.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include messagesFrame.cpp
sh: o: not found
o messagesManager.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include messagesManager.cpp
sh: o: not found
o pathManager.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include pathManager.cpp
sh: o: not found
o preference.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include preference.cpp
sh: o: not found
o preferencesDialog.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include preferencesDialog.cpp
sh: o: not found
o preferencesManager.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include preferencesManager.cpp
sh: o: not found
o progressManager.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include progressManager.cpp
sh: o: not found
o project.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include project.cpp
sh: o: not found
o projectHelperThread.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include projectHelperThread.cpp
sh: o: not found
o projectsManager.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include projectsManager.cpp
sh: o: not found
o staticBoldedText.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include staticBoldedText.cpp
sh: o: not found
o staticUrl.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include staticUrl.cpp
sh: o: not found
o tools.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include tools.cpp
sh: o: not found
o trayManager.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include trayManager.cpp
sh: o: not found
o workUnitFrame.o -c -DGTK_NO_CHECK_CASTS -D__WXGTK__ -D_FILE_OFFSET_BITS=64 -D_LARGE_FILES -DNO_GCC_PRAGMA -pthread -O2 -D_FAHMON_LINUX_ -Wall -Wno-strict-aliasing -I/usr/lib/wx/include/gtk2-unicode-release-2.6 -I/usr/include/wx-2.6 -I/home/fabio/Desktop/FahMon/include workUnitFrame.cpp
sh: o: not found
o fahmon -pthread aboutDialog.o base64Codec.o benchmark.o benchmarksDialog.o benchmarksManager.o client.o clientDialog.o clientHelperThread.o clientsManager.o core.o dataInputStream.o dataOutputStream.o eta.o fahlogAnalyzer.o firstTimeDialog.o htmlParser.o httpDownloader.o listViewClients.o main.o mainDialog.o messagesFrame.o messagesManager.o pathManager.o preference.o preferencesDialog.o preferencesManager.o progressManager.o project.o projectHelperThread.o projectsManager.o staticBoldedText.o staticUrl.o tools.o trayManager.o workUnitFrame.o -lwx_gtk2u_xrc-2.6 -lwx_gtk2u_qa-2.6 -lwx_gtk2u_html-2.6 -lwx_gtk2u_adv-2.6 -lwx_gtk2u_core-2.6 -lwx_baseu_xml-2.6 -lwx_baseu_net-2.6 -lwx_baseu-2.6
sh: o: not found
scons: done building targets.
root@fabio-desktop:/home/fabio/Desktop/FahMon/src# ./fahmon
-bash: ./fahmon: Arquivo ou diretório inexistente
root@fabio-desktop:/home/fabio/Desktop/FahMon/src#
Se me puderem ajudar, estou a correr Ubuntu 6.06 LTS nativo :)
 
Sacaste o build-essencial alguma vez ?


Edit: Depois de verificar corrigi o nome do package.

Código: 
sudo apt-get install build-essential
 
Vou preparar outro tutorial do fahmon com imagens, mas se entretanto alguém se quiser adiantar, faxavor :)

Cumps
 
Última edição:
O tutorial está quase pronto. precisa de quem teste a ver que tal e o que está fora do lugar.

O tutorial foi feito por mim, Fontemourisca, El_UnO e shello.

Qualquer problema tirem prinscreen sff para vermos todos.
 
Ora bem será que alguém me pode dizer o porque desta média de miséria?

Project : 2609
Core : Gromacs SMP
Frames : 100
Credit : 1523


-- AlunoaUA --

Min. Time / Frame : 39mn 03s - 561.62 ppd
Avg. Time / Frame : 39mn 07s - 560.66 ppd

Estou com o ubuntu nativo (sem vmware) o processador está a 2600. Para instalar segui as instruções dadas aqui tirando a instalação da vmware.

Já agora alguém me pode explicar o porque de esta consola (SMP) não se instalar como a normal para linux?

:kfold:
 
Mario:
Esta instalação é para facilitar a vida a quem não percebe nada de Linux.

Isso já melhorou? Colocaste a flag?
 
Mário, antes de mais tens AlunoaUA no fahmon,confirma isso.

E eu comecei com SMP mas em win, visto que o vmware comia me a memoria toda.

Project : 2610
Core : Gromacs SMP
Frames : 100
Credit : 1523


-- Cliente SMP --

Min. Time / Frame : 33mn 04s - 663.24 ppd
Avg. Time / Frame : 33mn 10s - 661.24 ppd

O engraçado é q começou hoje de manha com 30 min e tem vindo a decrescer...weird...
 
Uma coisa que reparei agora no monitor de sistema diz que o folding está a dormir (mesmo assim está a trabalhar). Não devia dizer em execução?
 
Hj aconteceu me eu desligar la,voltar a ligar e qd dei por ela nao tinha os fahcores executados a me puxarem memoria. voltei a desliga la e a liga la e la apareceram :) Verifica se esta mesmo a foldar com tudo nos eixos.
 
Project : 2610
Core : Gromacs SMP
Frames : 100
Credit : 1523


-- Cliente SMP --

Min. Time / Frame : 30mn 28s - 719.84 ppd
Avg. Time / Frame : 31mn 32s - 695.49 ppd


Estabilizou...va la,menos mal :)
Agora falta saber o que se passa c a consola do mario...:(
 
Ora bem.

Saquei uma consola nova directamente do site de standford e comecei a foldar.

Project : 2604
Core : Gromacs SMP
Frames : 100
Credit : 1760


-- consola2 --

Min. Time / Frame : 23mn 55s - 1059.68 ppd
Avg. Time / Frame : 23mn 55s - 1059.68 ppd

Só fiz três frames (pois tenho que acabar a ranhosa antes de dia 10) não sei se vai melhorar ou piorar.

Alguém pode comparar os ppd's?
 
As de 1760 pts fazem em todos os casos sempre melhores tempos que as de 1523 ou de 1385. Portanto é congruente. Se é muito ou pouco para esse pc não faço a mínima.

Cumps
 
Ora bem, estou a experimentar o VMWare Server com o Ubuntu 64 e não tenho net. Logo não consigo fazer nada. Se me ajudarem. Reparei agora que cada vez que ligo a VM ele diz que estou ligado por cablagem, mas quando tento aceder a uma qualquer não tenho net.
 
Como tenho tido uns ppd's muito baixos ando a dar voltas a cabeça a pensar o porque.

capturaecrabi5.png


O que quer dizer os quatro processos do foldoding estarem a dormir? É normal(uma vez que estão a usar o cpu quase a 100%)?

:kfold:
 
[03:12:46] Completed 445000 out of 500000 steps (89 percent)

Step 448630 Warning: pressure scaling more than 1%, mu: 1.15212 1.15212 1.16059

Step 448630 Warning: pressure scaling more than 1%, mu: 1.15212 1.15212 1.16059

Step 448630 Warning: pressure scaling more than 1%, mu: 1.15212 1.15212 1.16059

Step 448630 Warning: pressure scaling more than 1%, mu: 1.15212 1.15212 1.16059

Step 448631 Warning: pressure scaling more than 1%, mu: 1.3058 1.3058 1.34862

Step 448631 Warning: pressure scaling more than 1%, mu: 1.3058 1.3058 1.34862

Step 448631 Warning: pressure scaling more than 1%, mu: 1.3058 1.3058 1.34862

Step 448631 Warning: pressure scaling more than 1%, mu: 1.3058 1.3058 1.34862
[cli_3]: aborting job:
Fatal error in MPI_Sendrecv: Error message texts are not available
Clicar para expandir...

Não percebo isto também. Termino o folding e a seguir inicio novamente e ele continua de onde estava sem perder a WU.
 
Metro, isso tem a ver com a rede. Caso a VM (supondo que esse cliente está na VM) perca a ligação de rede, o cliente pára. Não que a esteja a usar, mas porque parece que o MPI precise dela.
 
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